15  Books

System	Valid input files	Compatibility with Python & R	Blog posts (tags, dates, filters) ?	Nice examples	Additional details
Jupyter Book Documentation	- Markdown .md - Jupyter notebook .ipynb - MyST markdown notebook .md - reStructured Text .rst (not recommended) [source]	Python tool. Would probably only use with R if you were working with R in .ipynb. Possible to convert .Rmd to ipynb or MyST	Not found example	SAMueL-1 SAMueL-2	Easy integration with BinderHub and Google Colab [source] Uses Sphinx to build book [source]
Sphinx Documentation	- reStructured Text .rst (default) - Markdown .md - Jupyter notebook .ipynb (with nbsphinx and MyST-NB)	Designed for Python, didn’t easily run into R implementation, but examples here in various languages	Yes	pyOpenSci Little book of R for biomedical statistics Chris Holdgraf’s blog	Thumbnail gallery, Binder, nbviewer [source]
Quarto Documentation	- Cross-language Quarto markdown .qmd (which combines markdown and executable code) -Jupyter notebook .ipynb - Markdown .md - R markdown .Rmd [source]	Explicitly supports dynamic content from Python, R, Julia and Observable [source] Comparison with Rmd	Well supported natively Tutorial 1 Tutorial 2 Tutorial 3	ddanieltan’s blog Quarto’s blog - github, site R for Data Science Python for Data Analysis HSMA DES Book - github, site	Huge range of supported output formats [source]
Jekyll	- Markdown .md - HTML	Written in Ruby. Creates simple static sites.		Exeter RSE Workshop - github, site Ruby’s website
Mkdocs Documentation	- Markdown .md Seems possible for others but more designed for markdown?	Designed for Python	Yes with Material for Mkdocs plugin	Material for MkDocs - github, site Cookiecutter Data Science - github, site	Material for MkDocs provides additional features
Bookdown Documentation	- R Markdown .Rmd	Designed for R		R Markdown Definitive Guide R Markdown Cookbook
Blogdown Documentation	- R Markdown .Rmd	Designed for R		List of blogs	Built on Hugo [source]
Hugodown Documentation	- R Markdown .Rmd	Designed for R		List of blogs	Built on Hugo
Distill for R Markdown Documentation	- R Markdown .Rmd	Designed for R	Yes natively (eg. set up project as blog or website)	Piping Hot Data Tidy models Before I sleep

Reflections on RMarkdown, Distill, Bookdown and Blogdown.

Paid: https://www.gitbook.com/pricing

Other random noted down options not explored: * Sandpaper, pegboard and varnish - example: https://carpentries-lab.github.io/good-enough-practices/index.html * Sweave/LaTeX RStudio/LaTeX Pandoc SageMath Colab Notebooks Nbconvert Pelican Org mode DocOnce Scribus Madoko Texinfo